Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Protein Folding (GO:0006457) Genes Targeted by hsa-mir-590-3p in MPM Mesothelioma Gordon Cluster 28 Table contains all genes in the MPM Mesothelioma Gordon cluster number 28. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-590-3p GO:0006457 471 ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase [Source:HGNC Symbol;Acc:794] zzz999 4259 MGST3 microsomal glutathione S-transferase 3 [Source:HGNC Symbol;Acc:7064] zzz999 9581 PREPL prolyl endopeptidase-like [Source:HGNC Symbol;Acc:30228] T 55737 VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:13487] P T 1337 COX6A1 cytochrome c oxidase subunit VIa polypeptide 1 [Source:HGNC Symbol;Acc:2277] zzz999 4190 MDH1 malate dehydrogenase 1, NAD (soluble) [Source:HGNC Symbol;Acc:6970] zzz999 64844 MARCH7 membrane-associated ring finger (C3HC4) 7 [Source:HGNC Symbol;Acc:17393] P T 8668 EIF3I eukaryotic translation initiation factor 3, subunit I [Source:HGNC Symbol;Acc:3272] T 28977 MRPL42 mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:14493] T 29105 C16orf80 chromosome 16 open reading frame 80 [Source:HGNC Symbol;Acc:29523] zzz999 7544 ZFY zinc finger protein, Y-linked [Source:HGNC Symbol;Acc:12870] T 10130 PDIA6 protein disulfide isomerase family A, member 6 [Source:HGNC Symbol;Acc:30168] zzz999 Yes 5479 PPIB peptidylprolyl isomerase B (cyclophilin B) [Source:HGNC Symbol;Acc:9255] zzz999 Yes 80777 CYB5B cytochrome b5 type B (outer mitochondrial membrane) [Source:HGNC Symbol;Acc:24374] P T 55159 RFWD3 ring finger and WD repeat domain 3 [Source:HGNC Symbol;Acc:25539] T 7328 UBE2H ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) [Source:HGNC Symbol;Acc:12484] zzz999 5510 PPP1R7 protein phosphatase 1, regulatory (inhibitor) subunit 7 [Source:HGNC Symbol;Acc:9295] zzz999 10473 HMGN4 high mobility group nucleosomal binding domain 4 [Source:HGNC Symbol;Acc:4989] T 27258 LSM3 LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17874] zzz999 6905 TBCE tubulin folding cofactor E [Source:HGNC Symbol;Acc:11582] T Yes 5987 TRIM27 tripartite motif containing 27 [Source:HGNC Symbol;Acc:9975] T 10051 SMC4 structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:14013] T 226 ALDOA aldolase A, fructose-bisphosphate [Source:HGNC Symbol;Acc:414] zzz999 821 CANX calnexin [Source:HGNC Symbol;Acc:1473] T Yes 6185 RPN2 ribophorin II [Source:HGNC Symbol;Acc:10382] zzz999 10730 YME1L1 YME1-like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:12843] P T 9698 PUM1 pumilio homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:14957] zzz999 400 ARL1 ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692] T 9784 SNX17 sorting nexin 17 [Source:HGNC Symbol;Acc:14979] zzz999 1967 EIF2B1 eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa [Source:HGNC Symbol;Acc:3257] T 10092 ARPC5 actin related protein 2/3 complex, subunit 5, 16kDa [Source:HGNC Symbol;Acc:708] T 57017 COQ9 coenzyme Q9 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25302] zzz999 51399 TRAPPC4 trafficking protein particle complex 4 [Source:HGNC Symbol;Acc:19943] zzz999 55699 IARS2 isoleucyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:29685] zzz999 6418 SET SET nuclear oncogene [Source:HGNC Symbol;Acc:10760] T 3326 HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 [Source:HGNC Symbol;Acc:5258] zzz999 Yes 9793 CKAP5 cytoskeleton associated protein 5 [Source:HGNC Symbol;Acc:28959] P T 11212 PROSC proline synthetase co-transcribed homolog (bacterial) [Source:HGNC Symbol;Acc:9457] T 10467 ZNHIT1 zinc finger, HIT-type containing 1 [Source:HGNC Symbol;Acc:21688] zzz999 653659 TMEM183A transmembrane protein 183A [Source:HGNC Symbol;Acc:20173] T 10973 ASCC3 activating signal cointegrator 1 complex subunit 3 [Source:HGNC Symbol;Acc:18697] P T 5685 PSMA4 proteasome (prosome, macropain) subunit, alpha type, 4 [Source:HGNC Symbol;Acc:9533] P T 55706 TMEM48 transmembrane protein 48 [Source:HGNC Symbol;Acc:25525] zzz999 92856 IMP4 IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) [Source:HGNC Symbol;Acc:30856] zzz999 7290 HIRA HIR histone cell cycle regulation defective homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:4916] zzz999 2950 GSTP1 glutathione S-transferase pi 1 [Source:HGNC Symbol;Acc:4638] T 6427 SRSF2 serine/arginine-rich splicing factor 2 [Source:HGNC Symbol;Acc:10783] P T 11337 GABARAP GABA(A) receptor-associated protein [Source:HGNC Symbol;Acc:4067] zzz999 22948 CCT5 chaperonin containing TCP1, subunit 5 (epsilon) [Source:HGNC Symbol;Acc:1618] zzz999 Yes 373156 GSTK1 glutathione S-transferase kappa 1 [Source:HGNC Symbol;Acc:16906] zzz999 23306 TMEM194A transmembrane protein 194A [Source:HGNC Symbol;Acc:29001] T 3309 HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:HGNC Symbol;Acc:5238] T Yes 29028 ATAD2 ATPase family, AAA domain containing 2 [Source:HGNC Symbol;Acc:30123] zzz999 9937 DCLRE1A DNA cross-link repair 1A [Source:HGNC Symbol;Acc:17660] P T 23568 ARL2BP ADP-ribosylation factor-like 2 binding protein [Source:HGNC Symbol;Acc:17146] zzz999 56954 NIT2 nitrilase family, member 2 [Source:HGNC Symbol;Acc:29878] zzz999 27131 SNX5 sorting nexin 5 [Source:HGNC Symbol;Acc:14969] P T 1022 CDK7 cyclin-dependent kinase 7 [Source:HGNC Symbol;Acc:1778] T 10094 ARPC3 actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706] zzz999 9867 PJA2 praja ring finger 2 [Source:HGNC Symbol;Acc:17481] P T 3190 HNRNPK heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:5044] P T 5832 ALDH18A1 aldehyde dehydrogenase 18 family, member A1 [Source:HGNC Symbol;Acc:9722] T 25836 NIPBL Nipped-B homolog (Drosophila) [Source:HGNC Symbol;Acc:28862] P T 5716 PSMD10 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 [Source:HGNC Symbol;Acc:9555] zzz999 6223 RPS19 ribosomal protein S19 [Source:HGNC Symbol;Acc:10402] zzz999 1351 COX8A cytochrome c oxidase subunit VIIIA (ubiquitous) [Source:HGNC Symbol;Acc:2294] zzz999 2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:4141] zzz999 23271 CAMSAP1L1 calmodulin regulated spectrin-associated protein 1-like 1 [Source:HGNC Symbol;Acc:29188] P T 7386 UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 [Source:HGNC Symbol;Acc:12587] T 6727 SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein) [Source:HGNC Symbol;Acc:11299] zzz999 2923 PDIA3 protein disulfide isomerase family A, member 3 [Source:HGNC Symbol;Acc:4606] T Yes 10294 DNAJA2 DnaJ (Hsp40) homolog, subfamily A, member 2 [Source:HGNC Symbol;Acc:14884] P T Yes 2958 GTF2A2 general transcription factor IIA, 2, 12kDa [Source:HGNC Symbol;Acc:4647] zzz999 9276 COPB2 coatomer protein complex, subunit beta 2 (beta prime) [Source:HGNC Symbol;Acc:2232] zzz999 127544 RNF19B ring finger protein 19B [Source:HGNC Symbol;Acc:26886] zzz999 55726 C12orf11 chromosome 12 open reading frame 11 [Source:HGNC Symbol;Acc:20174] P T 5073 PARN poly(A)-specific ribonuclease (deadenylation nuclease) [Source:HGNC Symbol;Acc:8609] T 8767 RIPK2 receptor-interacting serine-threonine kinase 2 [Source:HGNC Symbol;Acc:10020] zzz999 3020 H3F3B H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] zzz999 59338 PLEKHA1 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 [Source:HGNC Symbol;Acc:14335] P T 1315 COPB1 coatomer protein complex, subunit beta 1 [Source:HGNC Symbol;Acc:2231] P T 4292 MLH1 mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) [Source:HGNC Symbol;Acc:7127] zzz999 80013 FAM188A family with sequence similarity 188, member A [Source:HGNC Symbol;Acc:23578] T 10944 C11orf58 chromosome 11 open reading frame 58 [Source:HGNC Symbol;Acc:16990] P T 7764 ZNF217 zinc finger protein 217 [Source:HGNC Symbol;Acc:13009] T 23029 RBM34 RNA binding motif protein 34 [Source:HGNC Symbol;Acc:28965] zzz999 4705 NDUFA10 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa [Source:HGNC Symbol;Acc:7684] zzz999 6051 RNPEP arginyl aminopeptidase (aminopeptidase B) [Source:HGNC Symbol;Acc:10078] T 1039 CDR2 cerebellar degeneration-related protein 2, 62kDa [Source:HGNC Symbol;Acc:1799] zzz999 9805 SCRN1 secernin 1 [Source:HGNC Symbol;Acc:22192] T 6638 SNRPN small nuclear ribonucleoprotein polypeptide N [Source:HGNC Symbol;Acc:11164] zzz999 51142 CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:HGNC Symbol;Acc:21645] zzz999 3182 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B [Source:HGNC Symbol;Acc:5034] P T 55651 NHP2 NHP2 ribonucleoprotein homolog (yeast) [Source:HGNC Symbol;Acc:14377] zzz999 3588 IL10RB interleukin 10 receptor, beta [Source:HGNC Symbol;Acc:5965] T 643853 TMPPE transmembrane protein with metallophosphoesterase domain [Source:HGNC Symbol;Acc:33865] T 5355 PLP2 proteolipid protein 2 (colonic epithelium-enriched) [Source:HGNC Symbol;Acc:9087] zzz999 51318 MRPL35 mitochondrial ribosomal protein L35 [Source:HGNC Symbol;Acc:14489] zzz999 5194 PEX13 peroxisomal biogenesis factor 13 [Source:HGNC Symbol;Acc:8855] P T 1329 COX5B cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269] zzz999 65979 PHACTR4 phosphatase and actin regulator 4 [Source:HGNC Symbol;Acc:25793] T 10987 COPS5 COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) [Source:HGNC Symbol;Acc:2240] zzz999 6613 SUMO2 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) [Source:HGNC Symbol;Acc:11125] zzz999 54529 ASNSD1 asparagine synthetase domain containing 1 [Source:HGNC Symbol;Acc:24910] zzz999 9061 PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 [Source:HGNC Symbol;Acc:8603] P T 4710 NDUFB4 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa [Source:HGNC Symbol;Acc:7699] zzz999 23633 KPNA6 karyopherin alpha 6 (importin alpha 7) [Source:HGNC Symbol;Acc:6399] T 55968 NSFL1C NSFL1 (p97) cofactor (p47) [Source:HGNC Symbol;Acc:15912] T 10237 SLC35B1 solute carrier family 35, member B1 [Source:HGNC Symbol;Acc:20798] zzz999 23190 UBXN4 UBX domain protein 4 [Source:HGNC Symbol;Acc:14860] P T 8192 CLPP ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli) [Source:HGNC Symbol;Acc:2084] zzz999 55379 LRRC59 leucine rich repeat containing 59 [Source:HGNC Symbol;Acc:28817] zzz999 506 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide [Source:HGNC Symbol;Acc:830] zzz999 5571 PRKAG1 protein kinase, AMP-activated, gamma 1 non-catalytic subunit [Source:HGNC Symbol;Acc:9385] zzz999 5092 PCBD1 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha [Source:HGNC Symbol;Acc:8646] zzz999 7458 EIF4H eukaryotic translation initiation factor 4H [Source:HGNC Symbol;Acc:12741] zzz999 11345 GABARAPL2 GABA(A) receptor-associated protein-like 2 [Source:HGNC Symbol;Acc:13291] P T 7027 TFDP1 transcription factor Dp-1 [Source:HGNC Symbol;Acc:11749] P T 5250 SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 [Source:HGNC Symbol;Acc:10989] zzz999 9657 IQCB1 IQ motif containing B1 [Source:HGNC Symbol;Acc:28949] zzz999 6120 RPE ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293] zzz999 6726 SRP9 signal recognition particle 9kDa [Source:HGNC Symbol;Acc:11304] zzz999 79590 MRPL24 mitochondrial ribosomal protein L24 [Source:HGNC Symbol;Acc:14037] zzz999 57645 POGK pogo transposable element with KRAB domain [Source:HGNC Symbol;Acc:18800] T 51397 COMMD10 COMM domain containing 10 [Source:HGNC Symbol;Acc:30201] T 51283 BFAR bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:17613] T 52 ACP1 acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122] zzz999 328 APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:HGNC Symbol;Acc:587] zzz999 1781 DYNC1I2 dynein, cytoplasmic 1, intermediate chain 2 [Source:HGNC Symbol;Acc:2964] zzz999 191 AHCY adenosylhomocysteinase [Source:HGNC Symbol;Acc:343] zzz999 11216 AKAP10 A kinase (PRKA) anchor protein 10 [Source:HGNC Symbol;Acc:368] T 55848 C9orf46 chromosome 9 open reading frame 46 [Source:HGNC Symbol;Acc:23633] P T 28998 MRPL13 mitochondrial ribosomal protein L13 [Source:HGNC Symbol;Acc:14278] zzz999 55505 NOP10 NOP10 ribonucleoprotein homolog (yeast) [Source:HGNC Symbol;Acc:14378] zzz999 11222 MRPL3 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:10379] T 7417 VDAC2 voltage-dependent anion channel 2 [Source:HGNC Symbol;Acc:12672] zzz999 51693 TRAPPC2L trafficking protein particle complex 2-like [Source:HGNC Symbol;Acc:30887] zzz999 4200 ME2 malic enzyme 2, NAD(+)-dependent, mitochondrial [Source:HGNC Symbol;Acc:6984] zzz999 6810 STX4 syntaxin 4 [Source:HGNC Symbol;Acc:11439] T 51290 ERGIC2 ERGIC and golgi 2 [Source:HGNC Symbol;Acc:30208] zzz999 5837 PYGM phosphorylase, glycogen, muscle [Source:HGNC Symbol;Acc:9726] zzz999 51143 DYNC1LI1 dynein, cytoplasmic 1, light intermediate chain 1 [Source:HGNC Symbol;Acc:18745] T 10728 PTGES3 prostaglandin E synthase 3 (cytosolic) [Source:HGNC Symbol;Acc:16049] P T Yes 5037 PEBP1 phosphatidylethanolamine binding protein 1 [Source:HGNC Symbol;Acc:8630] zzz999 4076 CAPRIN1 cell cycle associated protein 1 [Source:HGNC Symbol;Acc:6743] T 55907 CMAS cytidine monophosphate N-acetylneuraminic acid synthetase [Source:HGNC Symbol;Acc:18290] zzz999 51133 KCTD3 potassium channel tetramerisation domain containing 3 [Source:HGNC Symbol;Acc:21305] P T 1964 EIF1AX eukaryotic translation initiation factor 1A, X-linked [Source:HGNC Symbol;Acc:3250] P T 10594 PRPF8 PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:17340] zzz999 4436 MSH2 mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli) [Source:HGNC Symbol;Acc:7325] zzz999 29883 CNOT7 CCR4-NOT transcription complex, subunit 7 [Source:HGNC Symbol;Acc:14101] P T 27249 MMADHC methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria [Source:HGNC Symbol;Acc:25221] T 8295 TRRAP transformation/transcription domain-associated protein [Source:HGNC Symbol;Acc:12347] zzz999 64960 MRPS15 mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:14504] zzz999 8607 RUVBL1 RuvB-like 1 (E. coli) [Source:HGNC Symbol;Acc:10474] zzz999

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